Viral Bioinformatics Research Centre
Chris Upton, University of Victoria, Canada
by cupton ·
See on Scoop.it – Virology and Bioinformatics from Virology.ca
Summary: Counting all the k-mers (substrings of length k) in DNA/RNA sequencing reads is the preliminary step of many bioinformatics applications. However, state of the art k-mer counting methods require that a large data structure resides in memory. Such structure typically grows with the number of distinct k-mers to count.
by cupton · Published February 24, 2014
by cupton · Published June 20, 2012
by cupton · Published January 6, 2014
It's my #Twitterversary! I have been on Twitter for 12 years, since 26 Jun 2008 (via @twi_age).
Top #tweeted story in #bioinformatics: Liftoff: an accurate gene annotation mapping tool | bioRxiv https://www.biorxiv.org/content/10.1101/2020.06.24.169680v1, see more http://tweetedtimes.com/v/1343?s=tnp
Reminder: Do you use the Pathway Tools software? We urgently need your letters of support for our grant application by today! See http://www.ai.sri.com/pkarp/misc/ptletter.txt. Your letter doesn't need to be long; please help us out any way you can! #Bioinformatics
Our ProFit software is now available as a docker image! Zero install, just download a little wrapper script and run it. #zeroinstall #docker #structuralbiology #bioinformatics http://www.bioinf.org.uk/software/profit/
