Virology.ca Tools

VBRC Tools


Here is a list of our tools as well as a brief description.
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VOCS – search and extract genome, gene and protein data from the database. VGO – an easy-to-use Java genome browser.
Base By Base – search and extract genome, gene and protein data from the database. JDotter – generate dot-plots for large genome or protein sequences
Sequence Searcher – search for protein and DNA motifs GATU (Genome Annotation Transfer Utility) –¬†annotates a genome based on closely related reference genomes
STS – Java program for building and exploring indexes of small or large amounts of DNA data.
GraphDNA – DNA Skew Graphing

CodonStatistics
– browse statistical information on one or more genomes
Hydrophobicity – graph amino acid hydrophobicity/hydrophilicity
j-CODEHOP – design COnsensus DEgenerate Hybrid Oligonucleotide Primers (CODEHOPs) from amino acid sequence alignments