A review of bioinformatic pipeline frameworks
High-throughput bioinformatic analyses increasingly rely on pipeline frameworks to process sequence and metadata. Modern implementations of these frameworks differ on three key dimensions: using an implicit or explicit syntax, using a configuration, convention or class-based design paradigm and offering a command line or workbench interface. Here I sur- vey and compare the design philosophies of several current pipeline frameworks. I provide practical recommendations based on analysis requirements and the user base.See it on Scoop.it, via Viruses and Bioinformatics from Virology.uvic.ca
A review of bioinformatic pipeline frameworks
Source: Viral Bioinformatics
