ViraPipe: Scalable Parallel Pipeline for Viral Metagenome Analysis from Next Generation Sequencing Reads.
ViraPipe is Apache Spark based pipeline for performing metagenome analysis from NGS read data in a computing cluster. The pipeline is tuned for analyzing viral metagenomes and the software is applicable for other metagenomic analyses as well. ViraPipe integrates parallel BWA-MEM read aligner, MegaHit De Novo assembler, and BLAST and HMMER3 sequence search tools.See it on Scoop.it, via Viruses and Bioinformatics from Virology.uvic.ca
ViraPipe: Scalable Parallel Pipeline for Viral Metagenome Analysis from Next Generation Sequencing Reads.
Source: Viral Bioinformatics
