Publication References

Publications Referencing the VBRC Tools


Zhang, Q., Liang, C., Yu, Y. A., Chen, N., Dandekar, T., and Szalay, A. A. (2009) The highly attenuated oncolytic recombinant vaccinia virus glv-1h68: Comparative genomic features and the contribution of f14.5l inactivation, Mol Genet Genomics 282, 417-435. PMID 19701652
Shchelkunov, S. N. (2009) How long ago did smallpox virus emerge?, Arch Virol 154, 1865-1871. PMID 19882103
Satheshkumar, P. S., Weisberg, A., and Moss, B. (2009) Vaccinia virus h7 protein contributes to the formation of crescent membrane precursors of immature virions, J Virol 83, 8439-8450. PMID 19553304
Okeke, M. I., Nilssen, O., Moens, U., Tryland, M., and Traavik, T. (2009) In vitro host range, multiplication and virion forms of recombinant viruses obtained from co-infection in vitro with a vaccinia-vectored influenza vaccine and a naturally occurring cowpox virus isolate, Virol J 6, 55.PMID 19435511
Myskiw, C., Arsenio, J., van Bruggen, R., Deschambault, Y., and Cao, J. (2009) Vaccinia virus e3 suppresses expression of diverse cytokines through inhibition of the pkr, nf-kappab, and irf3 pathways, J Virol 83, 6757-6768. PMID 19369349
Morales, M., Ramirez, M. A., Cano, M. J., Parraga, M., Castilla, J., Perez-Ordoyo, L. I., Torres, J. M., and Barcena, J. (2009) Genome comparison of a nonpathogenic myxoma virus field strain with its ancestor, the virulent lausanne strain, J Virol 83, 2397-2403. PMID 19091868
Emerson, G. L., Li, Y., Frace, M. A., Olsen-Rasmussen, M. A., Khristova, M. L., Govil, D., Sammons, S. A., Regnery, R. L., Karem, K. L., Damon, I. K., and Carroll, D. S. (2009) The phylogenetics and ecology of the orthopoxviruses endemic to north america, PLoS One 4, e7666.PMID 19865479
Unger, B., Nichols, R. J., Stanitsa, E. S., and Traktman, P. (2008) Functional characterization of the vaccinia virus i5 protein, Virol J 5, 148. PMID 19077320
Sood, C. L., Ward, J. M., and Moss, B. (2008) Vaccinia virus encodes i5, a small hydrophobic virion membrane protein that enhances replication and virulence in mice, J Virol 82, 10071-10078. PMID 18701595
Senkevich, T. G., Wyatt, L. S., Weisberg, A. S., Koonin, E. V., and Moss, B. (2008) A conserved poxvirus nlpc/p60 superfamily protein contributes to vaccinia virus virulence in mice but not to replication in cell culture, Virology 374, 506-514. PMID 18281072
Nichols, R. J., Stanitsa, E., Unger, B., and Traktman, P. (2008) The vaccinia virus gene i2l encodes a membrane protein with an essential role in virion entry, J Virol 82, 10247-10261.PMID 18701587
Gomez, C. E., Najera, J. L., Krupa, M., and Esteban, M. (2008) The poxvirus vectors mva and nyvac as gene delivery systems for vaccination against infectious diseases and cancer, Curr Gene Ther 8, 97-120. PMID 18393831
Domi, A., Weisberg, A. S., and Moss, B. (2008) Vaccinia virus e2l null mutants exhibit a major reduction in extracellular virion formation and virus spread, J Virol 82, 4215-4226. PMID 18287229
Fourment M, Gibbs MJ. (2008)
The VirusBanker database uses a Java program to allow flexible searching through Bunyaviridae sequences. BMC Bioinformatics, Vol 9: 83. PMID: 18251994
Chapman, D. A., Tcherepanov, V., Upton, C., and Dixon, L. K. (2008) Comparison of the genome sequences of non-pathogenic and pathogenic african swine fever virus isolates, J Gen Virol 89, 397-408. PMID 18198370
Becker, M. N., Todd, T. M., and Moyer, R. W. (2008) An amsacta moorei entomopoxvirus ortholog of the poly(a) polymerase small subunit exhibits methyltransferase activity and is non-essential for virus growth, Virology 375, 624-636. PMID 18367228
Liu, H., Wang R., Lu X.Q., Chen, J., Liu X.H., Ding, L. (2008) A new approach to the prediction of transmembrane structures.  Chinese Scientific Bulletin, 53:7, 1011-1014.
Abd-Alla, A. M. M., Cousserans, F., Parker, A. J., Jehle, J. A., Parker, N. J., Vlak, J. M., Robinson, A. S., Bergoin, M. (2008) Genome Analysis of a Glossina pallidipes Salivary Gland Hypertrophy Virus Reveals a Novel, Large, Double-Stranded Circular DNA Virus. J. Virol. vol. 82 (9),4595-4611 PMID: 18272583
Bhattacharya, D., Hoover, S., Falk S. P., Weisblum, B., Vestling, M., Striker, R. (2008) Phosphorylation of yellow fever virus NS5 alters methyltransferase activity.  J. Virol. Vol. 380 (2), 276-284. PMID: 18757072
Liu, C., Li, Z., Wu, W., Li, L., Yuan, M., Pan, L., Yang, K., Pang, Y. (2008) Autographa californica multiple nucleopolyhedrovirus ac53 plays a role in nucleocapsid assembly. J. Virol. Vol. 382 (1), 59-68. PMID: 18851866
Stanford, M. M., McFadden, G., Karupiah, G., and Chaudhri, G. (2007) Immunopathogenesis of poxvirus infections: Forecasting the impending storm, Immunol Cell Biol 85, 93-102. PMID 17228320
Silk, R. N., Bowick, G. C., Abrams, C. C., and Dixon, L. K. (2007) African swine fever virus a238l inhibitor of nf-kappab and of calcineurin phosphatase is imported actively into the nucleus and exported by a crm1-mediated pathway, J Gen Virol 88, 411-419. PMID 17251557
Osborne, J. D., Da Silva, M., Frace, A. M., Sammons, S. A., Olsen-Rasmussen, M., Upton, C., Buller, R. M., Chen, N., Feng, Z., Roper, R. L., Liu, J., Pougatcheva, S., Chen, W., Wohlhueter, R. M., and Esposito, J. J. (2007) Genomic differences of vaccinia virus clones from dryvax smallpox vaccine: The dryvax-like acam2000 and the mouse neurovirulent clone-3, Vaccine 25, 8807-8832. PMID 18037545
Myskiw, C., Deschambault, Y., Jefferies, K., He, R., and Cao, J. (2007) Aurintricarboxylic acid inhibits the early stage of vaccinia virus replication by targeting both cellular and viral factors, J Virol 81, 3027-3032. PMID 17192307
Minkah, N., Hwang, Y., Perry, K., Van Duyne, G. D., Hendrickson, R., Lefkowitz, E. J., Hannenhalli, S., and Bushman, F. D. (2007) Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in poxvirus genomes, Virology 365, 60-69. PMID 17462694
Meng, X., Embry, A., Sochia, D., and Xiang, Y. (2007) Vaccinia virus a6l encodes a virion core protein required for formation of mature virion, J Virol 81, 1433-1443. PMID 17108027
Kajon, A. E., and Erdman, D. D. (2007) Assessment of genetic variability among subspecies b1 human adenoviruses for molecular epidemiology studies, Methods Mol Med 131, 335-355. PMID 17656793
Iftode, C., and Flint, S. J. (2007) Analysis of the efficiency of adenovirus transcription, Methods Mol Med 131, 1-14. PMID 17656771
Dasgupta, A., Hammarlund, E., Slifka, M. K., and Fruh, K. (2007) Cowpox virus evades ctl recognition and inhibits the intracellular transport of mhc class i molecules, J Immunol 178, 1654-1661. PMID 17237415
Cornberg, M., Sheridan, B. S., Saccoccio, F. M., Brehm, M. A., and Selin, L. K. (2007) Protection against vaccinia virus challenge by cd8 memory t cells resolved by molecular mimicry, J Virol 81, 934-944. PMID 17079318
Connor, R. F., and Roper, R. L. (2007) Unique sars-cov protein nsp1: Bioinformatics, biochemistry and potential effects on virulence, Trends Microbiol 15, 51-53. PMID 17207625
Butler-Cole, C., Wagner, M. J., Da Silva, M., Brown, G. D., Burke, R. D., and Upton, C. (2007) An ectromelia virus profilin homolog interacts with cellular tropomyosin and viral a-type inclusion protein, Virol J 4, 76. PMID 17650322
Trindade, G. S., Emerson, G. L., Carroll, D. S., Kroon, E. G., Damon, I. K. (2007) Brazilian Vaccinia Viruses and Their Origins.  Emerg Infect Dis. 13:7, 965-972. PMID: 18214166
Xing, K., Deng, R., Wang, J., Feng, J., Huang, M., and Wang, X. (2006) Genome-based phylogeny of poxvirus, Intervirology 49, 207-214. PMID 16407658
Tulman, E. R., Delhon, G., Afonso, C. L., Lu, Z., Zsak, L., Sandybaev, N. T., Kerembekova, U. Z., Zaitsev, V. L., Kutish, G. F., and Rock, D. L. (2006) Genome of horsepox virus, J Virol 80, 9244-9258. PMID 16940536
Tscharke, D. C., Woo, W. P., Sakala, I. G., Sidney, J., Sette, A., Moss, D. J., Bennink, J. R., Karupiah, G., and Yewdell, J. W. (2006) Poxvirus cd8+ t-cell determinants and cross-reactivity in balb/c mice, J Virol 80, 6318-6323. PMID 16775319
Roper, R. L. (2006) Characterization of the vaccinia virus a35r protein and its role in virulence, J Virol 80, 306-313. PMID 16352555
Richardson, J., Viswanathan, K., and Lucas, A. (2006) Serpins, the vasculature, and viral therapeutics, Front Biosci 11, 1042-1056. PMID 16146796
McInnes, C. J., Wood, A. R., Thomas, K., Sainsbury, A. W., Gurnell, J., Dein, F. J., and Nettleton, P. F. (2006) Genomic characterization of a novel poxvirus contributing to the decline of the red squirrel (sciurus vulgaris) in the uk, J Gen Virol 87, 2115-2125. PMID 16847106
Zachertowska A, Brewer D, Evans DH. (2006) Characterization of the major capsid proteins of myxoma virus particles using MALDI-TOF mass spectrometry. Journal of Virological Methods, Vol 132: 1-2, 1-12. PMID: 16226321
Li, G., Chen, N., Feng, Z., Buller, R. M., Osborne, J., Harms, T., Damon, I., Upton, C., and Esteban, D. J. (2006) Genomic sequence and analysis of a vaccinia virus isolate from a patient with a smallpox vaccine-related complication, Virol J 3, 88. PMID 17062162
Hwang, Y., Minkah, N., Perry, K., Van Duyne, G. D., and Bushman, F. D. (2006) Regulation of catalysis by the smallpox virus topoisomerase, J Biol Chem 281, 38052-38060. PMID 17032643
Coppock, D. L., and Thorpe, C. (2006) Multidomain flavin-dependent sulfhydryl oxidases,Antioxid Redox Signal 8, 300-311. PMID 16677076
Chen, R. A., Jacobs, N., and Smith, G. L. (2006) Vaccinia virus strain western reserve protein b14 is an intracellular virulence factor, J Gen Virol 87, 1451-1458. PMID 16690909
Lauzon, H., Garcia-Maruniak, A., Zanotto, P.M., Clemente, J. C., Herniou, E. A., Lucarotti, C. J., Arif, B. M., and Maruniak, J. E. (2006) Genomic comparison of Neodiprion sertifer and Neodiprion lecontei nucleopolyhedroviruses and identification of potential hymenopteran baculovirus-specific open reading frames. J. Gen. Virol. Vol. 87 (6),1477-1489. PMID: 16690912
Aoyagi, M., Zhai, D., Jin, C., Aleshin, A. E., Stec, B., Reed, J. C., and Liddington, R. C. (2006) Vaccinia virus N1L protein resembles a B cell lymphoma-2 (Bcl-2) family protein. Protein Sci.Vol. 16 (1),118-124. PMID: 17123957
Esposito, J.J., Sammons, S. A., Frace A M, Osborne, J. D.,  Olsen-Rasmussen, M., Zhang, M., Govil D., Damon, I. K., Kline, R., Laker, M., Li, Y., Smith, G. L., Meyer, H., LeDuc, J. W., Wohlhueter, R. M. (2006) Genome Sequence Diversity and Clues to the Evolution of Variola (Smallpox) Virus.  Science, Vol. 313:5788, 807-812. PMID: 16873609
Tscharke, D. C., Karupiah, G., Zhou, J., Palmore, T., Irvine, K. R., Haeryfar, S. M., Williams, S., Sidney, J., Sette, A., Bennink, J. R., and Yewdell, J. W. (2005) Identification of poxvirus cd8+ t cell determinants to enable rational design and characterization of smallpox vaccines, J Exp Med201, 95-104. PMID 15623576
Senkevich, T. G., Ojeda, S., Townsley, A., Nelson, G. E., and Moss, B. (2005) Poxvirus multiprotein entry-fusion complex, Proc Natl Acad Sci U S A 102, 18572-18577. PMID 16339313
Resch, W., Weisberg, A. S., and Moss, B. (2005) Vaccinia virus nonstructural protein encoded by the a11r gene is required for formation of the virion membrane, J Virol 79, 6598-6609. PMID 15890898
Resch, W., and Moss, B. (2005) The conserved poxvirus l3 virion protein is required for transcription of vaccinia virus early genes, J Virol 79, 14719-14729. PMID 16282472
Prichard, M. N., and Kern, E. R. (2005) Orthopoxvirus targets for the development of antiviral therapies, Curr Drug Targets Infect Disord 5, 17-28. PMID 15777195
Luttge, B. G., and Moyer, R. W. (2005) Suppressors of a host range mutation in the rabbitpox virus serpin spi-1 map to proteins essential for viral DNA replication, J Virol 79, 9168-9179. PMID 15994811
Punjabi A, Traktman P. (2005) Cell biological and functional characterization of the vaccinia virus F10 kinase: Implications for the mechanism of virion morphogenesis. Journal of Virology Vol 79: 4, 2171-2190 PMID: 15681420
Esteban, D. J., Buller, M. L. (2005) Ectromelia virus: the causative agent of mousepox.  J. Gen. Virol. Vol. 86, 2645-2659. PMID: 16186218
Li, G., Chen, N., Roper, R. L., Feng, Z., Hunter, A., Danila, M., Lefkowitz, E. J., Buller, R. M., and Upton, C. (2005) Complete coding sequences of the rabbitpox virus genome, J Gen Virol 86, 2969-2977. PMID 16227218
Jing, L., Chong, T. M., McClurkan, C. L., Huang, J., Story, B. T., and Koelle, D. M. (2005) Diversity in the acute cd8 t cell response to vaccinia virus in humans, J Immunol 175, 7550-7559. PMID 16301664
Pasquetto, V., Bui, H-H, Giannino, R., Mirza, F., Sidney, J., Oseroff, C., Tscharke, D. C., Irvine, K., Bennink, J. R., Peters, B., Southwood, S., Cerundolo, V., Grey, H., Yewdell, J. W., Sette, A.  (2005) HLA-A*0201, HLA-A*1101, and HLA-B*0702 Transgenic Mice Recognize Numerous Poxvirus Determinants from a Wide Variety of Viral Gene Products.  J. Immunol.175:12, 5504-5515. PMID: 16210659
Smith, G. L., and Law, M. (2004) The exit of vaccinia virus from infected cells, Virus Res 106, 189-197. PMID 15567497
Lucas, A., and McFadden, G. (2004) Secreted immunomodulatory viral proteins as novel biotherapeutics, J Immunol 173, 4765-4774. PMID 15470015
Gubser, C., Hue, S., Kellam, P., and Smith, G. L. (2004) Poxvirus genomes: A phylogenetic analysis, J Gen Virol 85, 105-117. PMID 14718625
Dixon, L. K., Abrams, C. C., Bowick, G., Goatley, L. C., Kay-Jackson, P. C., Chapman, D., Liverani, E., Nix, R., Silk, R., and Zhang, F. (2004) African swine fever virus proteins involved in evading host defence systems, Vet Immunol Immunopathol 100, 117-134. PMID 15207450
Delhon, G., Tulman, E. R., Afonso, C. L., Lu, Z., de la Concha-Bermejillo, A., Lehmkuhl, H. D., Piccone, M. E., Kutish, G. F., and Rock, D. L. (2004) Genomes of the parapoxviruses orf virus and bovine papular stomatitis virus, J Virol 78, 168-177. PMID 14671098
da Fonseca, F. G., Weisberg, A. S., Caeiro, M. F., and Moss, B. (2004) Vaccinia virus mutants with alanine substitutions in the conserved g5r gene fail to initiate morphogenesis at the nonpermissive temperature, J Virol 78, 10238-10248. PMID 15367589
Ansarah-Sobrinho, C., and Moss, B. (2004) Vaccinia virus g1 protein, a predicted metalloprotease, is essential for morphogenesis of infectious virions but not for cleavage of major core proteins, J Virol 78, 6855-6863. PMID 15194761
Davison, A. J., Benko, M., and Harrach, B. (2003) Genetic content and evolution of adenoviruses, J Gen Virol 84, 2895-2908.PMID 14573794

Viral Genome Organizer (VGO):
Chapman, D. A., Tcherepanov, V., Upton, C., and Dixon, L. K. (2008) Comparison of the genome sequences of non-pathogenic and pathogenic african swine fever virus isolates, J Gen Virol 89, 397-408. PMID 18198370
Eaton, H. E., Metcalf, J., Penny, E., Tcherepanov, V., Upton, C., and Brunetti, C. R. (2007) Comparative genomic analysis of the family iridoviridae: Re-annotating and defining the core set of iridovirus genes, Virol J 4, 11. PMID 17239238
Li, G., Chen, N., Feng, Z., Buller, R. M., Osborne, J., Harms, T., Damon, I., Upton, C., and Esteban, D. J. (2006) Genomic sequence and analysis of a vaccinia virus isolate from a patient with a smallpox vaccine-related complication, Virol J 3, 88.PMID 17062162
Li, G., Chen, N., Roper, R. L., Feng, Z., Hunter, A., Danila, M., Lefkowitz, E. J., Buller, R. M., and Upton, C. (2005) Complete coding sequences of the rabbitpox virus genome, J Gen Virol 86, 2969-2977. PMID 16227218
Wang, C., and Lefkowitz, E. J. (2005) Genomic multiple sequence alignments: Refinement using a genetic algorithm, BMC Bioinformatics 6, 200. PMID 16086841
Yan, Q. (2008) Bioinformatics databases and tools in virology research: An overview, In Silico Biol 8, 71-85. PMID 18928197
Zafar, N., Mazumder, R., and Seto, D. (2002) Coregenes: A computational tool for identifying and cataloging “Core” Genes in a set of small genomes, BMC Bioinformatics 3, 12. PMID 11972896
Zafar N, Mazumder R, Seto D (2002) Application of global computational tools GeneOrder and CoreGenes to the comparative analyses of chordopoxvirus genomes. Information Sciences, Vol 146: 1-4, 127-135

Java Dot Plot Alignments (JDotter):
Ellis PJ, Ferguson L,  Clemente EJ, Affara NA
Bidirectional transcription of a novel chimeric gene mapping to mouse chromosome Yq. BMC EVOLUTIONARY BIOLOGY, 2007; Vol 7: 171
PMID: 17892569
Hobza R, Kejnovsky E, Vyskot B, Widmer A
The role of chromosomal rearrangements in the evolution of Silene latifolia sex chromosomes. MOLECULAR GENETICS AND GENOMICS, 2007;Vol 278: 6, 633-638
PMID: 17671795
Neumann P, Yan HH, Jiang JM
The centromeric retrotransposons of rice are transcribed and differentially processed by RNA interference. GENETICS, 2007; Vol 176: 2, 749-761
PMID: 17409063
Comeau AM, Bertrand C, Letarov A, Tetart F, Krisch HM
Modular architecture of the T4 phage superfamily: A conserved core genome and a plastic periphery. VIROLOGY 2007; Vol 362:2, 384-396
PMID: 17289101
Hazle T, Bonen L
Comparative analysis of sequences preceding protein-coding mitochondrial genes in flowering plants. MOLECULAR BIOLOGY AND EVOLUTION, 2007; Vol 24: 5, 1101-1112
PMID: 17301062
van Leeuwen H, Monfort A, Puigdomenech P
Mutator-like elements identified in melon, Arabidopsis and rice contain ULP1 protease domains. MOLECULAR GENETICS AND GENOMICS, 2007; Vol 277: 4,357-364
PMID: 17136348
Kejnovsky E, Kubat Z, Macas J, Hobza R, Mracek J, Vyskot B
Retand: a novel family of gypsy-like retrotransposons harboring an amplified tandem repeat. MOLECULAR GENETICS AND GENOMICS, 2006; Vol 276:3, 254-263
PMID: 16826419
Hobza R, Lengerova M, Svoboda J, Kubekova H, Kejnovsky E, Vyskot B
An accumulation of tandem DNA repeats on the Y chromosome in Silene latifolia during early stages of sex chromosome evolution. CHROMOSOMA, 2006; Vol 115: 5, 376-382
PMID: 16612641
Yang HY, Gingle AR
OxfordGrid: a web interface for pairwise comparative map views. BIOINFORMATICS, 2005; Vol 21: 23,4307-4308
PMID: 16204347
Silverstein KAT, Graham MA, Paape TD, VandenBosch KA
Genome organization of more than 300 defensin-like genes in Arabidopsis. PLANT PHYSIOLOGY, 2005; Vol 138: 2, 600-610
PMID: 15955924
van Leeuwen H, Garcia-Mas J, Coca M, Puigdomenech P, Monfort A
Analysis of the melon genome in regions encompassing TIR-NBS-LRR resistance genes. MOLECULAR GENETICS AND GENOMICS, 2005; Vol 273: 3,240-251
PMID: 15902490
Nix DA, Eisen MB
GATA: a graphic alignment tool for comparative sequence analysis. BMC BIOINFORMATICS, 2005; Vol 6: 9
PMID: 15655071
Graham MA, Silverstein KAT, Cannon SB, VandenBosch KA
Computational identification and characterization of novel genes from legumes. PLANT PHYSIOLOGY, 2004; Vol 135: 3,1179-1197
PMID: 15266052 
Smith, D. R., Snyder, M.  Complete Mitochondrial DNA Sequence of the Scallop Placopecten magellanicus: Evidence of Transposition Leading to an Uncharacteristically Large Mitochondrial Genome. J Mol Evol (2007) vol. 65 (4) pp. 380-391.
PMID: 17922075
Zhang C., Xiong Q., Kikuchi T., Rikihisa Y.  Identification of 19 Polymorphic Major Outer Membrane Protein Genes and Their Immunogenic Peptides in Ehrlichia ewingii for Use in a Serodiagnostic Assay. Clin Vaccine Immunol. (2007) vol. 15 (3) pp. 402-411.
PMID: 18094116

Recent Hits Acquired by Blast (ReHAB):
Givan SA, Sullivan CM, Carrington JC
The Personal Sequence Database: a suite of tools to create and maintain web-accessible sequence databases, BMC BIOINFORMATICS, 2007; Vol 8: 479
PMID: 18088438
Nilsson RH, Kristiansson E, Ryberg M, Larsson KH
Approaching the taxonomic affiliation of unidentified sequences in public databases – an example from the mycorrhizal fungi. BMC BIOINFORMATICS, 2005; Vol 6 : 178
PMID: 16022740

Genome Annotation Transfer Utility (GATU):
Frishman D
Protein annotation at genomic scale: The current status. CHEMICAL REVIEWS   Vol: 107 Issue: 8: 3448-3466
PMID: 17658902

Base By Base:
Snyder EE, Kampanya N, Lu J, Nordberg EK, Karur HR, Shukla M, Soneja J, Tian Y, Xue T, Yoo H, Zhang F, Dharmanolla C, Dongre NV, Gillespie JJ, Hamelius J, Hance M, Huntington KI, Jukneliene D, Koziski J, Mackasmiel L, Mane SP, Nguyen V, Purkayastha A, Shallom J, Yu G, Guo Y, Gabbard J, Hix D, Azad AF, Baker SC, Boyle SM, Khudyakov Y, Meng XJ, Rupprecht C, Vinje J, Crasta OR, Czar MJ, Dickerman A, Eckart JD, Kenyon R, Will R, Setubal JC, Sobral BWS
PATRIC: The VBI PathoSystems Resource Integration Center: NUCLEIC ACIDS RESEARCH, 2007; Vol: 35   Special Issue: Sp. Iss. SI   Pages: D401-D406
PMID: 17142235
Enault, F; Fremez, R; Baranowski, E. Faraut, T
Alvira: comparative genomics of viral strains. BIOINFORMATICS, 2007; 23 (16): 2178-2179
PMID: 17550913
Kulkarni-Kale U, Bhosle SG, Manjari GS, Joshi M Bansode S, Kolaskar AS.  Curation of viral genomes: challenges, applications and the way forward.  BMC BIOINFORMATICS, 2006; Volume: 7 Article Number: S12   Supplement: Suppl. 5
PMID: 17254296