The running of Taverna Workflows within an IPython Notebook
See on Scoop.it – Virology and Bioinformatics from Virology.ca
biodiversity, data mobilization, data, publishing, data, acquisition, data, curation
data, synthesis, data, interoperability, linked, data, flora, fauna, taxon, treatment, legacy, literature, prospective, publishing, semantic, interoperability,
taxonomy, coordination, policy, development, European Open Biodiversity Knowledge Management System, dissemination, mark up, persistent, identifiers
During the recent pro-iBiosphere Data Enrichment Hackathon, a prototype Taverna Player Client Python package was developed for IPython Notebook. The package allows the listing of workflows available on a Taverna Portal, selection of a workflow and the running of the workflow within the Notebook. Data from the Python environment can be used as inputs to the workflow, and the results of the workflow run are available for further manipulation in the notebook. User can interact with the running of the workflow using the Taverna Player and interaction services.
See on www.pro-ibiosphere.eu
