GraphDNA
NOTE: This tool requires Java Version 8. Download it here: Java Runtime Environment.
DNA Skew Graphing
DNA Skew Graphing (GraphDNA) allows the user to generate graphical representations of raw DNA sequences. To date, there are 8 graphing options and the user can plot any of the individual genes or genomes in any format.
Getting started
If you’re new to GraphDNA, click on the launch button (on the right) and use the Quick Start Page to learn the basics (or if you’re like us… just start clicking!).
The VBRC also provides additional help resources for GraphDNA:
- How to doc; short descriptions of certain analyses you might want to do.
- FAQs (Frequently Asked Questions)
- Finally, just email us a question and we’ll gladly help you out.
References
Thomas, J.M., Horspool, D., Brown, G., Tcherepanov, V., and Upton, C. 2007.
GraphDNA: a Java program for graphical display of DNA composition analyses. BMC Bioinformatics. 8:21.
Troubleshooting
If your system does not launch Viral Orthologous Clusters, it is probably missing Java Runtime Environment 1.8. Please see Java Web Start Setup and Java Web Start Tips for help.
Submit a feature request
Is there a feature that you think this tool needs? Submit a wish.
