Tool Help

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Tool Main Help Page

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Quick Start Pages:

First time using one of the VBRC tools? Then this is the place to start. A lot of effort has gone into making the tools and website intuitive to use, but the software has a lot of functionality and these Quick Start pages will help give you an idea of what you can accomplish.

VBRC Overview Viral Orthologous Clusters (VOCs) Viral Genome Organizer (VGO) Base-By-Base (BBB) Suffix Tree Searcher (STS) Java Dot Plot Alignments (JDotter) Recent Hits Acquired from Blast (ReHAB) Java Interface for miRanda (JIM) Java GUI for InterProScan (JIPS)

Genome Annotation Transfer Utility (GATU) GraphDNA Codon Statistics  Hydrophobicity Grapher Sequence Searcher (SeqS) Suffix Tree Searcher (STS)

How To Documentation:

This documentation will provide step-by-step examples of the common and more powerful features of the software. Again, browsing through the headings for this documentation will quickly give you some idea of what the software can do.

Viral Orthologous Clusters (VOCs) Viral Genome Organizer (VGO) Base-By-Base (BBB) Java Dot Plot Alignments (JDotter) Genome Annotation Transfer Utility (GATU)

GraphDNA Codon Statistics Hydrophobicity Grapher Sequence Searcher (SeqS) j-CODEHOP

Help Books for VBRC Tools:

This is the detailed documentation describing each of the features/menu items of the tools. You can generate PDFs of this material.

Viral Orthologous Clusters (VOCs) Viral Genome Organizer (VGO) Base-By-Base (BBB) Java Dot Plot Alignments (JDotter) Recent Hits Acquired from Blast (ReHAB)

Java GUI for INterProScan (JIPS) Genome Annotation Transfer Utility (GATU) Local Alignment with JAVA (Laj) Gallery Documentation Suffix Tree Searcher (STS) Manual